Productivity
Data format
Frequently used formats:
Other relavant information:
- http://gmod.org/wiki/Glossary
- https://genome.ucsc.edu/FAQ/FAQformat.html
- https://m.ensembl.org/info/website/upload/gff.html
Software manuals (Nutstore copy)
NGS data
Genome Browser
High quality genome annotations
Website
Books and Journals
Related Journals
- Nature Review Genetics
- Trends in Ecology and Evolution
- Annual Review of Ecology, Evolution, and Systematics
- Nature Genetics
- Molecular Biology and Evolution
- Nature Ecology & Evolution
- Molecular Ecology
- Methods in Ecology and Evolution
- Genome Biology
- Genome Research
- Molecular Cell
- Developmental Cell
- Other multidisciplinary journals including Cell, Nature, Science, PNAS, Current Biology, PLoS Biology, elife, Journal of Genetics and Genomics, PLoS Genetics, Genetics, Evolution, …
Probability and Statistics
- Introduction to Linear Algebra
- Linear algebra done right
- The Elements of Statistical Learning
- An Introduction to Statistical Learning
- Bayesian Data Analysis
- Deep Learning
Evolution and Ecology
- Molecular Evolution: A Statistical Approach by Ziheng Yang
- Mathematical Population Genetics by Warren J. Ewens
- An Introduction to Population Genetics: Theory and Applications by Rasmus Nielsen & Montgomery Slatkin
- Theoretical Evolutionary Genetics by J. Felsenstein
- Probability Models for DNA Sequence Evolution by Richard Durrett
- Coalescent Theory: An Introduction By John Wakeley
Other lists of books on Statistics, Evolution, and Bioinformatics
Programming
R
Style guide: tidyverse
Learning resources:
python
Learning resources:
Linux
There are many reference books on linux:
- UNIX and Linux System Administration Handbook
- Linux Bible
- Linux Administration: A Beginner’s Guide
- How Linux Works: What Every Superuser Should Know
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