Scripts and Tutorials

• In-house scripts for data analysis
• Miscellaneous tutorials on Linux, R, and Bioinformatics
• Other tutorials

Python packages

• isolens: a python package for isoform-resolution analysis of RNA modifications and poly(A) tail lengths based on Direct RNA-sequencing data.
• psite: a python package for accurate inference of P-site offsets of ribosomal footprints.
• gppy: A python package for genomic interval conversions and transcript metainfo extraction from GTF files.

R packages

• cubar: An R package for codon usage bias analysis

Dataset

• Annotation of canonical uORFs in 478 eukaryotes

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